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The primary sequence of proteins is best described by the statement that proteins


A) contain amino acids.
B) include all the nitrogen compounds of tissues.
C) are salts of amino acids linked with one another.
D) are polymers formed by hydrogen bonding between the amino acids.
E) are polymers formed by amide linkages between the carboxyl and alpha-amino groups of alpha-amino acids.

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Which of the following is a characteristic of the amino acid composition of a protein which has an isoelectric pH (pI) of 9.5 ?


A) no basic amino acids
B) no acidic amino acids
C) no neutral amino acids
D) more basic than acidic amino acids
E) more acidic than basic amino acids

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Which of the following statements describing the alpha_helix is NOT correct?


A) It is found in globular proteins in both aqueous and membrane environments.
B) It may have a surface that is amphipathic (hydrophobic on one side and hydrophilic on the other) .
C) Prolines are positioned at intervals of three or four residues.
D) Side chains (R groups) pointing away from the core of the helix may stabilize its conformation.
E) There are about 3.5 amino acid residues in each turn.

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Chaperone proteins help nascent proteins achieve correct folding. What other function do they serve?


A) Addition of prosthetic groups
B) Cleavage of zymogens
C) Protein refolding after crossing a membrane
D) Stabilization of tetrameric conformation
E) Targeting to organelles

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Which of the following is a kind of physical/chemical interaction of major quantitative importance in the overall structure of most globular proteins and occurs chiefly in the interior areas of the molecule?


A) Disulfide bridges.
B) Hydrophobic bonds.
C) Amide linkages between amino acid sidechains.
D) Ester linkages between sidechains of acidic and alcoholic amino acids.
E) Hydrogen bonds to water molecules.

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Proteins will normally exhibit minimum solubility in aqueous solutions at


A) a pH values above Pi.
B) a pH values below Pi.
C) a pH value = Pi.
D) low salt concentrations.
E) none of the above

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We have treated a protein with chymotrypsin (cleaves at aromatic amino acid residues) and have isolated a polypeptide fragment produced during the chymotryptic digestion. The amino acid composition of the polypeptide was found to be amino acid moles/mole polypeptide lysine (lys) 2 glycine (gly) 1 serine (ser) 1 phenylalanine (phe) 1. The N-terminal amino acid, determined by the dansylation procedure, was serine. Treatment of the polypeptide with trypsin (cleaves at basic amino acid residues) gave two dipeptides plus free phenylalanine What is the amino acid sequence of this polypeptide?


A) ser-gly-lys-phe-lys
B) gly-lys-ser-lys-phe
C) ser-gly-lys-lys-phe
D) phe-lys-gly-ser-lys
E) ser-lys-gly-lys-phe

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All of the following statements about protein structure are correct EXCEPT which one?


A) Other than peptide bonds, hydrogen bonding is the most important interaction in pleated sheet and alpha-helical structures.
B) The peptide bond is one kind of amide linkage.
C) The native state of a protein is the least stable form under cell conditions and accordingly is easily denatured.
D) In the alpha helix, the amino acid side chains project out from the coiled backbone of the polypeptide chain.
E) Globular proteins often contain a pocket or groove into which a prosthetic group or substrate can fit.

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Which of the following describes the side chain of phenylalanine?


A) contains a sulfhydryl group
B) contains an alcoholic group
C) contains an branched chain hydrocarbon
D) doesn't have a side chain
E) contains an aromatic ring

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A major force that contributes to the conformation of proteins and, in globular proteins, occurs primarily in their interior is


A) hydrogen bonds.
B) charged dipoles.
C) hydrophobic interactions.
D) disulfide bridges.
E) hydration by water.

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Collagen is a protein whose conformation is characterized by


A) a triple helix.
B) a double alpha-helix.
C) antiparallel beta-sheet regions.
D) mostly random coil regions.
E) the lack of any stable conformation.

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All of the following bond types are significant for the maintenance of the secondary, tertiary, and quaternary structure of enzymes or proteins EXCEPT


A) hydrophobic interactions.
B) disulfide bonds.
C) ester bonds.
D) hydrogen bonds.
E) electrostatic interactions.

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Which of the following describes the side chain of leucine?


A) contains a sulfhydryl group
B) contains an alcoholic group
C) contains an branched chain hydrocarbon
D) doesn't have a side chain
E) contains an acidic group

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Denaturation of a protein usually involves the disruption of all of the following types of interactions EXCEPT


A) Van Der Waals interactions.
B) peptide bonds.
C) hydrogen bonds.
D) ionic interactions.
E) hydrophobic interactions.

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If gly has a positive charge in a buffer at pH 1, then gly-gly-gly in the same buffer should have which of the following charges?


A) +3
B) +2
C) +1
D) -1
E) -2

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Which of the following amino acids possesses an uncharged side-chain at pH 7.0?


A) lysine
B) aspartate
C) arginine
D) serine
E) glutamate

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Which of the following peptides would be partially hydrolyzed by the enzyme trypsin?


A) glu-ala-tyr-lys
B) ser-asn-ser-ser
C) pro-gly-thr-ala
D) gly-arg-gln-trp
E) None of the other answers is correct.

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All of the following amino acids are required as precursors for collagen synthesis EXCEPT


A) lysine.
B) glycine.
C) proline.
D) hydroxyproline.
E) phenylalanine.

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Which of the following statements about protein structure is correct?


A) The alpha-helix conformation is stabilized by hydrophobic interactions.
B) The beta-sheet conformation is rarely found in globular proteins.
C) The folding of a polypeptide into a globular structure results in an interior enriched with hydrophobic amino acids.
D) The primary structure does not influence the native tertiary structure.
E) The subunits of proteins with quaternary structure associate through covalent bonds.

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The peptide bond has all of the following characteristics EXCEPT


A) planarity.
B) freedom to rotate.
C) polarity.
D) greater stability in TRANS configuration.
E) partial double bond character.

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